Low end that progressively gets worse while riding is always due to heat. but not always in the same way.
"heat fade" is the process of your combustion getting too hot after everything heats up. Basically after you ride around for a while, usually 5 min or so but every bike is different, your bike starts to lose alot of low end. this is because the spark plug is too hot. To fix this go to a higher # plug, if you run a 6 go to s 7 if a 7 go 8 etc.
The second heat related progressive loss of low end is due to the transmission fluid getting too hot and slipping like a motha. This happens when clutches are tuned out drastically, they are shot, or the type of fluid used is not correct. Fluids like mobil 1 5w20 and non moto grade tranny fluid will slip more as they heat up (some tuners tune with this in mind) More constant fluids like moto grade atf will always grab the same and break down less with heat.
Its easy to tell if the clutch slip is the culprit, if the loss in low end is resulting a prolonged clutch engagement or a clutch that "double shifts" ie catches then releases and catches again, then its obviously a slipping issue.
Other reasons bikes have bad lowend are as follows:
timing is too retarded
jetting/tuning is drastically off
air leaks, especially in the magneto side crank seal.
gearing is too tall
intake is too big
Steps I'd take to trouble shoot if its not the clutch, if you think it might be the clutch open that shit up and check it out, replace the fluid with moto grade atf (not car atf) as well.
throw in a cooler plug--- test
check for air leaks around the magneto side seal, obvious ones will have goo coming out of them. if you find one, rebuild the motor.
set timing to full advance on the stator and set the points gap to a a hairline (i really need to figure out what i set the timing too "hairline" is kinda vague, just make sure its really small and still firing)---test
pop in a a larger (or stock) pilot jet and re tune that circuit as instructed above.--test
btw 37 sounds kinda small for the pilot jet, just my opinion tho, i never tuned a 65 metra.