shaking in a transmission is caused by any number of thins;
bad clutch shoe/s
clutch not aligned properly
bad clutch spring
clutch frozen or sticking to the shaft
worn clutch shoe/s
improperly shimmed clutch drum
improperly shimmed gears
improperly shimmed gear or clutch shaft
loose bolts or clips holding parts together
improper fluid level
improper fluid
worn gears or shafts
lubrication problem/s
or just plain not assembled correctly