"It's missing the CDI / coil (does anyone have any recommendations on that or just get the OEM one?)"
I think you are missing the HT Coil and CDI box? tomos usually has a thing thats both in one box. Post a picture of the wires that come from your stator. we need to know how many and their colors.
also...post a picture of what you do have to get better input. it def looks like a stock tomos flywheel, but its not a great pic of it either. (edited)